What was the weather like? My Vee runs OK on E10 most of the time, which is lucky as there often isn't a choice over there now, but when it is really hot then it can get pretty lumpy low down, almost a misfire. Presumably the fuel is basically boiling within the system somewhere. This has happened on a few trips, only when the weather has been mid-30s or above and some slow traffic riding is occurring. I try to fill up with the regular 95 petrol when its hot, and the problem does not occur then.
My only other observation about it is that sometimes the fuel consumption on E10 can be relatively poor, on standard 95 it seems much more consistent.