No.
With the secondary butterflies removes the position sensor should be left alone.
The secondary TPS gets self calibrated as the STVA cycles through it's range of motion.
Ps, unless you have and issue, put the plates back in.
It makes throttle response too snappy, prone to stepping out the back when you don't want it to, but it does smooth out the roll on roll off the throttle snatchyness.
I removed the plates on my K6 as I had an issue with a sticky STVA. I eventually cleaned it all out and put the plate back in.
Fuel consumption increased with the plates removed.